Health Sciences Publications of Kenneth Paul Baclawski

1. K. Baclawski. Materials & Methods Monitor. Northeastern University. (1992)

2. K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. Data/knowledge bases for biological papers and techniques. In Proc. Sympos. Adv. Data Management for the Scientist and Engineer 23-28. (1993) [pdf]

3. K. Baclawski, R. Futrelle, N. Fridman and M. Pescitelli. Database techniques for biological materials & methods. In First Int. Conf. Intell. Sys. Molecular Biology 21-28. (1993) [pdf]

4. K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. M&M-Query: Materials & Methods Knowledge Base and Query System. NU-CCS-93-06. Northeastern University, College of Computer Science. (1993)

5. K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. Data/knowledge bases for biological papers and techniques. Northeastern University. (1993)

6. K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. M&M-Query: Materials & Methods Knowledge Base and Query System. Northeastern University. (1993)

7. K. Baclawski. Materials & Methods Monitor. Northeastern University. (1993)

8. C. Hafner, K. Baclawski, R. Futrelle, N. Fridman and S. Sampath. Creating a Knowledge Base of Biological Research Papers. In Proc. Second Int. Conf. Intell. Sys. Molecular Biology 147-155. (1994) [pdf]

9. K. Baclawski and N. Fridman. M&M-Query: Database support for the annotation and retrieval of biological research articles. NU-CCS-94-07. Northeastern University, College of Computer Science. (1994) [pdf]

10. K. Baclawski. Materials & Methods Monitor. Northeastern University. (1994)

11. K. Baclawski. Scientific Databases Project Final Report. Northeastern University. (1997) [pdf]

12. K. Baclawski, J. Cigna, M.M. Kokar, P. Mager and B. Indurkhya. Knowledge Representation and Indexing Using the Unified Medical Language System. In Pacific Symposium on Biocomputing 5:490-501. (2000) [pdf][ppt]

13. K. Baclawski, T. Niu and E. Neumann. Using DAML format for representing complex gene networks: implications in novel drug discovery. Amer. J. Human Genetics 69 (Suppl)(4):457. (2001) [pdf][ppt]

14. K. Baclawski, T. Niu and E. Neumann. PathML: An ontology for biochemical pathways. In ISMB Workshop . (2001) [pdf][ppt]

15. T. Niu, K. Baclawski, S. Huang and J. Letkowski. MotifML: A Novel Ontology-based Language for Protein-Binding Motifs: Implications in Dissecting the Genetic Regulatory Circuitry. Harvard University, Division of Preventive Medicine. (2003) [pdf][ppt]

16. K. Baclawski and T. Niu. Ontologies for Bioinformatics. MIT Press, Cambridge, MA. (October 2005) [ONTOBIO Website]

17. T. Niu, K. Baclawski, Y. Feng and H. Wang. Database Schema for Management and Storage of Single Nucleotide Polymorphism. Am. J. Human Genetics 73 (Suppl):A467. (2003)

18. K. Baclawski. Web Technologies for Bioinformatics. Division of Preventive Medicine, Brigham and Women's Hospital, Harvard Medical School. (October 2003) [pdf][ppt]

19. K. Baclawski. Mining the Biomedical Research Literature. Department of Statistics, Harvard University. (November 2003) [pdf][ppt]

20. K. Baclawski and T. Niu. Genepack distributed bioinformatics system. Harvard Medical School. (2003)

21. T. Niu, K. Baclawski, Y. Feng and H. Wang. Ontology and database for Single Nucleotide Polymorphism. Harvard University. (2003)

22. K. Baclawski. Introduction to the Semantic Web for Bioinformatics. (August 8, 2005) [pdf][ppt]

23. K. Baclawski. Probabilistic foundations of meta-analysis. Talk at the Harvard School of Public Health . (March 4, 2005) [pdf][ppt]

24. K. Baclawski and T. Niu. Ontologies for Bioinformatics. ONTOBIO Website (2005)

25. K. Baclawski. Applications of the Semantic Web for the Life Sciences. Talk at SRI . (August 9, 2005)

26. K. Baclawski. Introduction to the Semantic Web for Bioinformatics. Massachusetts Biotech Council Tutorial . (August 23, 2005) [pdf][ppt][Massachusetts Biotechnology Council]

27. K. Baclawski. Introduction to the Semantic Web for Bioinformatics. Collaborative Expedition Workshop on Advancing Toward Credible Agreements Around Information Sharing Environments, Governance, and Data Architecture . (December 6, 2005) [pdf][ppt]

28. K. Baclawski. The Bayesian Web: Adding Reasoning with Uncertainty to the Semantic Web. Bio-IT Conference . (April 4, 2006) [pdf][ppt][Website]

29. K. Baclawski. Some Major Biomedical Challenges. NLM. (2006) [pdf][doc]

30. K. Baclawski. Emerging Semantic Web Applications for the Life Sciences. Massachusetts Biotech Council Tutorial . (June 29, 2006) [pdf][ppt][Website]

31. K. Baclawski and T. Niu. Bioinformatics. Jaico Publishing, Mumbai, India. (2007)

32. K. Baclawski and N. Sarkar. Enhancing Organism Based Disease Knowledge Via Name Based Taxonomic Intelligence. In An Open Ontology Repository (OOR): Rationale, Expectations and Requirements. Ontolog Forum. (March 27, 2008) [pdf][ppt][Session page]

33. K. Baclawski, Y. Yin and H. Yu. Biomedical Terminology in the ICU. (September 25, 2012)

34. K. Baclawski, Y. Yin and H. Yu. Biomedical Terminology in the ICU. (October 29, 2012)

35. K. Baclawski. Relationships between the biomedical terminology used by clinicians and medical test measurement results in intensive care units. In Critical Data: Secondary Use of Big Data from Critical Care . (January 7, 2014) [pdf]

36. K. Baclawski. Medical Terminology. NEBEC. (April 1, 2023) [pdf]